Detailed information of SNP:
|
SNP ID:
sf0316481268(Gbrowse)
Chromosome: chr03 Position: 16481268 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 55.67% | 44.33% |
| All Indica | 796 | 29.02% | 70.98% |
| All Japonica | 492 | 99.39% | 0.61% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 373 | 34.85% | 65.15% |
| Indica II | 213 | 18.78% | 81.22% |
| Indica Intermediate | 210 | 29.05% | 70.95% |
| Temperate Japonica | 330 | 99.39% | 0.61% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316481268 | C->T | INTERGENIC | None |