Detailed information of SNP:
|
SNP ID:
sf0316481306(Gbrowse)
Chromosome: chr03 Position: 16481306 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 89.17% | 10.83% |
| All Indica | 796 | 96.61% | 3.39% |
| All Japonica | 496 | 77.62% | 22.38% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 373 | 97.86% | 2.14% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 334 | 91.62% | 8.38% |
| Tropical Japonica | 94 | 47.87% | 52.13% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316481306 | T->C | INTERGENIC | None |