Detailed information of SNP:
|
SNP ID:
sf0316490562(Gbrowse)
Chromosome: chr03 Position: 16490562 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 54.16% | 45.84% |
| All Indica | 789 | 27.12% | 72.88% |
| All Japonica | 495 | 98.79% | 1.21% |
| Aus | 66 | 25.76% | 74.24% |
| Indica I | 369 | 34.69% | 65.31% |
| Indica II | 210 | 12.86% | 87.14% |
| Indica Intermediate | 210 | 28.10% | 71.90% |
| Temperate Japonica | 333 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316490562 | C->T | LOC_Os03g29035(LOC_Os03g29035.1) | INTRON |