Detailed information of SNP:
|
SNP ID:
sf0316501517(Gbrowse)
Chromosome: chr03 Position: 16501517 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 53.50% | 46.50% |
| All Indica | 799 | 75.72% | 24.28% |
| All Japonica | 493 | 22.52% | 77.48% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 68.27% | 31.73% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 75.36% | 24.64% |
| Temperate Japonica | 333 | 15.62% | 84.38% |
| Tropical Japonica | 93 | 54.84% | 45.16% |
| Japonica Intermediate | 67 | 11.94% | 88.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316501517 | C->T | INTERGENIC | None |