Detailed information of SNP:
|
SNP ID:
sf0316502785(Gbrowse)
Chromosome: chr03 Position: 16502785 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 64.27% | 35.73% |
| All Indica | 797 | 78.42% | 21.58% |
| All Japonica | 489 | 38.65% | 61.35% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 375 | 70.13% | 29.87% |
| Indica II | 211 | 91.00% | 9.00% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 331 | 27.79% | 72.21% |
| Tropical Japonica | 93 | 59.14% | 40.86% |
| Japonica Intermediate | 65 | 64.62% | 35.38% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316502785 | C->T | INTERGENIC | None |