Detailed information of SNP:
|
SNP ID:
sf0316502803(Gbrowse)
Chromosome: chr03 Position: 16502803 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 52.86% | 47.14% |
| All Indica | 791 | 77.50% | 22.50% |
| All Japonica | 488 | 18.03% | 81.97% |
| Aus | 65 | 24.62% | 75.38% |
| Indica I | 374 | 69.79% | 30.21% |
| Indica II | 209 | 89.47% | 10.53% |
| Indica Intermediate | 208 | 79.33% | 20.67% |
| Temperate Japonica | 329 | 10.33% | 89.67% |
| Tropical Japonica | 94 | 53.19% | 46.81% |
| Japonica Intermediate | 65 | 6.15% | 93.85% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316502803 | A->G | INTERGENIC | None |