Detailed information of SNP:
|
SNP ID:
sf0316504815(Gbrowse)
Chromosome: chr03 Position: 16504815 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 64.05% | 35.95% |
| All Indica | 799 | 78.10% | 21.90% |
| All Japonica | 494 | 38.46% | 61.54% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 375 | 69.87% | 30.13% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 332 | 27.41% | 72.59% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316504815 | A->G | INTERGENIC | None |