Detailed information of SNP:
|
SNP ID:
sf0316508619(Gbrowse)
Chromosome: chr03 Position: 16508619 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 64.86% | 35.14% |
| All Indica | 797 | 79.05% | 20.95% |
| All Japonica | 487 | 39.43% | 60.57% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 69.87% | 30.13% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 210 | 81.90% | 18.10% |
| Temperate Japonica | 327 | 28.75% | 71.25% |
| Tropical Japonica | 92 | 59.78% | 40.22% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 71.05% | 28.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316508619 | A->G | INTERGENIC | None |