Detailed information of SNP:
|
SNP ID:
sf0316512302(Gbrowse)
Chromosome: chr03 Position: 16512302 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 58.72% | 41.28% |
| All Indica | 798 | 79.07% | 20.93% |
| All Japonica | 485 | 28.04% | 71.96% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 70.13% | 29.87% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 210 | 80.95% | 19.05% |
| Temperate Japonica | 323 | 21.67% | 78.33% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316512302 | A->G | INTERGENIC | None |