Detailed information of SNP:
|
SNP ID:
sf0316512745(Gbrowse)
Chromosome: chr03 Position: 16512745 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 57.22% | 42.78% |
| All Indica | 798 | 76.82% | 23.18% |
| All Japonica | 492 | 28.66% | 71.34% |
| Aus | 66 | 36.36% | 63.64% |
| Indica I | 375 | 68.27% | 31.73% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 210 | 76.67% | 23.33% |
| Temperate Japonica | 330 | 22.73% | 77.27% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316512745 | G->A | INTERGENIC | None |