Detailed information of SNP:
|
SNP ID:
sf0316512863(Gbrowse)
Chromosome: chr03 Position: 16512863 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 66.81% | 33.19% |
| All Indica | 795 | 79.37% | 20.63% |
| All Japonica | 490 | 42.45% | 57.55% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 374 | 70.05% | 29.95% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 209 | 82.30% | 17.70% |
| Temperate Japonica | 330 | 32.12% | 67.88% |
| Tropical Japonica | 93 | 61.29% | 38.71% |
| Japonica Intermediate | 67 | 67.16% | 32.84% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316512863 | T->G | INTERGENIC | None |