Detailed information of SNP:
|
SNP ID:
sf0316514772(Gbrowse)
Chromosome: chr03 Position: 16514772 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 65.64% | 34.36% |
| All Indica | 792 | 79.42% | 20.58% |
| All Japonica | 484 | 39.88% | 60.12% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 374 | 70.05% | 29.95% |
| Indica II | 210 | 92.86% | 7.14% |
| Indica Intermediate | 208 | 82.69% | 17.31% |
| Temperate Japonica | 325 | 29.23% | 70.77% |
| Tropical Japonica | 93 | 61.29% | 38.71% |
| Japonica Intermediate | 66 | 62.12% | 37.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 37 | 78.38% | 21.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316514772 | T->C | INTERGENIC | None |