Detailed information of SNP:
|
SNP ID:
sf0316514811(Gbrowse)
Chromosome: chr03 Position: 16514811 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 53.72% | 46.28% |
| All Indica | 793 | 78.06% | 21.94% |
| All Japonica | 486 | 18.52% | 81.48% |
| Aus | 64 | 28.12% | 71.88% |
| Indica I | 375 | 69.60% | 30.40% |
| Indica II | 210 | 90.95% | 9.05% |
| Indica Intermediate | 208 | 80.29% | 19.71% |
| Temperate Japonica | 328 | 10.06% | 89.94% |
| Tropical Japonica | 94 | 55.32% | 44.68% |
| Japonica Intermediate | 64 | 7.81% | 92.19% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316514811 | T->C | INTERGENIC | None |