Detailed information of SNP:
|
SNP ID:
sf0316517171(Gbrowse)
Chromosome: chr03 Position: 16517171 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 64.89% | 35.11% |
| All Indica | 796 | 79.27% | 20.73% |
| All Japonica | 488 | 38.93% | 61.07% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 375 | 70.13% | 29.87% |
| Indica II | 211 | 92.42% | 7.58% |
| Indica Intermediate | 210 | 82.38% | 17.62% |
| Temperate Japonica | 330 | 28.48% | 71.52% |
| Tropical Japonica | 93 | 59.14% | 40.86% |
| Japonica Intermediate | 65 | 63.08% | 36.92% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316517171 | T->C | LOC_Os03g29075(LOC_Os03g29075.1) | Synonymous |