Detailed information of SNP:
|
SNP ID:
sf0316519227(Gbrowse)
Chromosome: chr03 Position: 16519227 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 50.50% | 49.50% |
| All Indica | 796 | 75.50% | 24.50% |
| All Japonica | 487 | 14.78% | 85.22% |
| Aus | 62 | 20.97% | 79.03% |
| Indica I | 375 | 68.00% | 32.00% |
| Indica II | 210 | 90.00% | 10.00% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 328 | 5.79% | 94.21% |
| Tropical Japonica | 93 | 51.61% | 48.39% |
| Japonica Intermediate | 66 | 7.58% | 92.42% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 48.72% | 51.28% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316519227 | G->A | LOC_Os03g29085(LOC_Os03g29085.1) | Non-Synonymous SNP |