Detailed information of SNP:
|
SNP ID:
sf0316519797(Gbrowse)
Chromosome: chr03 Position: 16519797 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 56.96% | 43.04% |
| All Indica | 798 | 77.94% | 22.06% |
| All Japonica | 489 | 25.56% | 74.44% |
| Aus | 66 | 37.88% | 62.12% |
| Indica I | 375 | 69.87% | 30.13% |
| Indica II | 212 | 90.57% | 9.43% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 328 | 18.29% | 81.71% |
| Tropical Japonica | 93 | 55.91% | 44.09% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316519797 | A->G | LOC_Os03g29085(LOC_Os03g29085.1) | Non-Synonymous SNP |