Detailed information of SNP:
|
SNP ID:
sf0316522471(Gbrowse)
Chromosome: chr03 Position: 16522471 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 68.40% | 31.60% |
| All Indica | 797 | 79.30% | 20.70% |
| All Japonica | 486 | 46.50% | 53.50% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 70.05% | 29.95% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 82.38% | 17.62% |
| Temperate Japonica | 325 | 36.00% | 64.00% |
| Tropical Japonica | 93 | 64.52% | 35.48% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316522471 | A->G | LOC_Os03g29100(LOC_Os03g29100.1) | INTRON |
| sf0316522471 | A->G | LOC_Os03g29100(LOC_Os03g29100.1) | SNPs that disrupt splice sites |