Detailed information of SNP:
|
SNP ID:
sf0316524911(Gbrowse)
Chromosome: chr03 Position: 16524911 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 64.86% | 35.14% |
| All Indica | 794 | 74.56% | 25.44% |
| All Japonica | 490 | 47.14% | 52.86% |
| Aus | 64 | 82.81% | 17.19% |
| Indica I | 374 | 67.38% | 32.62% |
| Indica II | 212 | 89.15% | 10.85% |
| Indica Intermediate | 208 | 72.60% | 27.40% |
| Temperate Japonica | 330 | 38.18% | 61.82% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 66 | 69.70% | 30.30% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 81.58% | 18.42% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316524911 | T->C | LOC_Os03g29100(LOC_Os03g29100.1) | INTRON |