Detailed information of SNP:
|
SNP ID:
sf0316548038(Gbrowse)
Chromosome: chr03 Position: 16548038 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 76.89% | 23.11% |
| All Indica | 798 | 98.37% | 1.63% |
| All Japonica | 496 | 52.42% | 47.58% |
| Aus | 66 | 18.18% | 81.82% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 334 | 60.18% | 39.82% |
| Tropical Japonica | 94 | 42.55% | 57.45% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316548038 | C->T | LOC_Os03g29140(LOC_Os03g29140.1) | INTRON |