Detailed information of SNP:
|
SNP ID:
sf0316585285(Gbrowse)
Chromosome: chr03 Position: 16585285 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 67.63% | 32.37% |
| All Indica | 799 | 76.97% | 23.03% |
| All Japonica | 496 | 48.99% | 51.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 65.07% | 34.93% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 40.30% | 59.70% |
| Tropical Japonica | 93 | 63.44% | 36.56% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316585285 | T->C | LOC_Os03g29184(LOC_Os03g29184.1) | UTR_3_PRIME |