Detailed information of SNP:
|
SNP ID:
sf0316590900(Gbrowse)
Chromosome: chr03 Position: 16590900 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 58.83% | 41.17% |
| All Indica | 798 | 77.19% | 22.81% |
| All Japonica | 495 | 24.44% | 75.56% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 64.00% | 36.00% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 334 | 7.49% | 92.51% |
| Tropical Japonica | 93 | 58.06% | 41.94% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316590900 | A->G | LOC_Os03g29190(LOC_Os03g29190.2) | INTRON |
| sf0316590900 | A->G | LOC_Os03g29190(LOC_Os03g29190.1) | INTRON |