Detailed information of SNP:
|
SNP ID:
sf0316594577(Gbrowse)
Chromosome: chr03 Position: 16594577 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 91.94% | 8.06% |
| All Indica | 798 | 98.75% | 1.25% |
| All Japonica | 493 | 85.19% | 14.81% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 334 | 92.81% | 7.19% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 65 | 43.08% | 56.92% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316594577 | G->C | LOC_Os03g29190(LOC_Os03g29190.2) | UTR_3_PRIME |
| sf0316594577 | G->C | LOC_Os03g29190(LOC_Os03g29190.1) | UTR_3_PRIME |