Detailed information of SNP:
|
SNP ID:
sf0316595616(Gbrowse)
Chromosome: chr03 Position: 16595616 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1310 | 97.40% | 2.60% |
| All Indica | 755 | 100.00% | 0.00% |
| All Japonica | 434 | 92.40% | 7.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 337 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 205 | 100.00% | 0.00% |
| Temperate Japonica | 277 | 88.81% | 11.19% |
| Tropical Japonica | 91 | 97.80% | 2.20% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316595616 | C->T | INTERGENIC | None |