Detailed information of SNP:
|
SNP ID:
sf0316603303(Gbrowse)
Chromosome: chr03 Position: 16603303 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1316 | 76.82% | 23.18% |
| All Indica | 700 | 57.43% | 42.57% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 333 | 68.77% | 31.23% |
| Indica II | 181 | 38.67% | 61.33% |
| Indica Intermediate | 186 | 55.38% | 44.62% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 86.84% | 13.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316603303 | G->A | INTERGENIC | None |