Detailed information of SNP:
|
SNP ID:
sf0316604577(Gbrowse)
Chromosome: chr03 Position: 16604577 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 93.25% | 6.75% |
| All Indica | 788 | 95.56% | 4.44% |
| All Japonica | 494 | 93.12% | 6.88% |
| Aus | 55 | 60.00% | 40.00% |
| Indica I | 372 | 96.51% | 3.49% |
| Indica II | 211 | 97.63% | 2.37% |
| Indica Intermediate | 205 | 91.71% | 8.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 64.84% | 35.16% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316604577 | G->T | LOC_Os03g29206(LOC_Os03g29206.1) | Non-Synonymous SNP |