Detailed information of SNP:
|
SNP ID:
sf0316607238(Gbrowse)
Chromosome: chr03 Position: 16607238 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 65.52% | 34.48% |
| All Indica | 778 | 39.46% | 60.54% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 51.23% | 48.77% |
| Indica II | 207 | 18.84% | 81.16% |
| Indica Intermediate | 206 | 39.32% | 60.68% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316607238 | C->T | LOC_Os03g29212(LOC_Os03g29212.1) | INTRON |