Detailed information of SNP:
|
SNP ID:
sf0316625023(Gbrowse)
Chromosome: chr03 Position: 16625023 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1375 | 90.11% | 9.89% |
| All Indica | 756 | 89.55% | 10.45% |
| All Japonica | 497 | 89.74% | 10.26% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 364 | 90.11% | 9.89% |
| Indica II | 191 | 98.43% | 1.57% |
| Indica Intermediate | 201 | 80.10% | 19.90% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316625023 | A->G | INTERGENIC | None |