Detailed information of SNP:
|
SNP ID:
sf0316677841(Gbrowse)
Chromosome: chr03 Position: 16677841 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 87.17% | 12.83% |
| All Indica | 783 | 80.59% | 19.41% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 364 | 74.45% | 25.55% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 207 | 77.78% | 22.22% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316677841 | G->A | LOC_Os03g29290(LOC_Os03g29290.1) | Non-Synonymous SNP |