Detailed information of SNP:
|
SNP ID:
sf0316679324(Gbrowse)
Chromosome: chr03 Position: 16679324 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1345 | 92.27% | 7.73% |
| All Indica | 729 | 88.20% | 11.80% |
| All Japonica | 495 | 97.58% | 2.42% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 328 | 85.37% | 14.63% |
| Indica II | 209 | 95.69% | 4.31% |
| Indica Intermediate | 192 | 84.90% | 15.10% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 86.96% | 13.04% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316679324 | G->A | INTERGENIC | None |