Detailed information of SNP:
|
SNP ID:
sf0316682766(Gbrowse)
Chromosome: chr03 Position: 16682766 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 55.99% | 44.01% |
| All Indica | 799 | 30.79% | 69.21% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 11.73% | 88.27% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 211 | 20.38% | 79.62% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316682766 | A->G | LOC_Os03g29310(LOC_Os03g29310.1) | Non-Synonymous SNP |