Detailed information of SNP:
|
SNP ID:
sf0316683749(Gbrowse)
Chromosome: chr03 Position: 16683749 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1344 | 92.71% | 7.29% |
| All Indica | 725 | 87.59% | 12.41% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 329 | 83.28% | 16.72% |
| Indica II | 209 | 94.74% | 5.26% |
| Indica Intermediate | 187 | 87.17% | 12.83% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316683749 | C->T | INTERGENIC | None |