Detailed information of SNP:
|
SNP ID:
sf0316688398(Gbrowse)
Chromosome: chr03 Position: 16688398 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 55.70% | 44.30% |
| All Indica | 794 | 30.35% | 69.65% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 374 | 11.76% | 88.24% |
| Indica II | 212 | 73.58% | 26.42% |
| Indica Intermediate | 208 | 19.71% | 80.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316688398 | T->C | LOC_Os03g29330(LOC_Os03g29330.1) | INTRON |