Detailed information of SNP:
|
SNP ID:
sf0316690045(Gbrowse)
Chromosome: chr03 Position: 16690045 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1303 | 94.47% | 5.53% |
| All Indica | 713 | 92.29% | 7.71% |
| All Japonica | 493 | 97.36% | 2.64% |
| Aus | 43 | 95.35% | 4.65% |
| Indica I | 320 | 89.38% | 10.62% |
| Indica II | 210 | 97.62% | 2.38% |
| Indica Intermediate | 183 | 91.26% | 8.74% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 85.56% | 14.44% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316690045 | T->A | INTERGENIC | None |