Detailed information of SNP:



SNP ID: sf0316705162(Gbrowse)

Chromosome: chr03

Position: 16705162
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1342 75.78% 24.22%
All Indica784 77.30% 22.70%
All Japonica440 72.50% 27.50%
Aus66 100.00% 0.00%
Indica I374 97.59% 2.41%
Indica II201 32.84% 67.16%
Indica Intermediate209 83.73% 16.27%
Temperate Japonica302 90.07% 9.93%
Tropical Japonica86 32.56% 67.44%
Japonica Intermediate52 36.54% 63.46%
Group VI/Aromatic14 14.29% 85.71%
Intermediate38 63.16% 36.84%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0316705162 C->T INTERGENIC None