Detailed information of SNP:
|
SNP ID:
sf0316705162(Gbrowse)
Chromosome: chr03 Position: 16705162 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1342 | 75.78% | 24.22% |
| All Indica | 784 | 77.30% | 22.70% |
| All Japonica | 440 | 72.50% | 27.50% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 201 | 32.84% | 67.16% |
| Indica Intermediate | 209 | 83.73% | 16.27% |
| Temperate Japonica | 302 | 90.07% | 9.93% |
| Tropical Japonica | 86 | 32.56% | 67.44% |
| Japonica Intermediate | 52 | 36.54% | 63.46% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316705162 | C->T | INTERGENIC | None |