Detailed information of SNP:
|
SNP ID:
sf0316717054(Gbrowse)
Chromosome: chr03 Position: 16717054 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1309 | 98.09% | 1.91% |
| All Indica | 757 | 99.87% | 0.13% |
| All Japonica | 436 | 94.72% | 5.28% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 363 | 100.00% | 0.00% |
| Indica II | 191 | 100.00% | 0.00% |
| Indica Intermediate | 203 | 99.51% | 0.49% |
| Temperate Japonica | 291 | 98.97% | 1.03% |
| Tropical Japonica | 85 | 96.47% | 3.53% |
| Japonica Intermediate | 60 | 71.67% | 28.33% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 97.30% | 2.70% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316717054 | T->C | INTERGENIC | None |