Detailed information of SNP:
|
SNP ID:
sf0316732087(Gbrowse)
Chromosome: chr03 Position: 16732087 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1291 | 80.48% | 19.52% |
| All Indica | 773 | 79.69% | 20.31% |
| All Japonica | 397 | 80.60% | 19.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 196 | 37.24% | 62.76% |
| Indica Intermediate | 203 | 85.71% | 14.29% |
| Temperate Japonica | 282 | 94.33% | 5.67% |
| Tropical Japonica | 68 | 39.71% | 60.29% |
| Japonica Intermediate | 47 | 57.45% | 42.55% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316732087 | G->T | INTERGENIC | None |