Detailed information of SNP:
|
SNP ID:
sf0316758232(Gbrowse)
Chromosome: chr03 Position: 16758232 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 80.48% | 19.52% |
| All Indica | 799 | 72.09% | 27.91% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 59.20% | 40.80% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 76.30% | 23.70% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316758232 | G->T | INTERGENIC | None |