Detailed information of SNP:
|
SNP ID:
sf0316785719(Gbrowse)
Chromosome: chr03 Position: 16785719 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1233 | 94.16% | 5.84% |
| All Indica | 619 | 88.69% | 11.31% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 261 | 80.46% | 19.54% |
| Indica II | 192 | 99.48% | 0.52% |
| Indica Intermediate | 166 | 89.16% | 10.84% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316785719 | C->T | INTERGENIC | None |