Detailed information of SNP:
|
SNP ID:
sf0316789796(Gbrowse)
Chromosome: chr03 Position: 16789796 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1361 | 56.87% | 43.13% |
| All Indica | 798 | 29.07% | 70.93% |
| All Japonica | 493 | 99.80% | 0.20% |
| Aus | 16 | 43.75% | 56.25% |
| Indica I | 374 | 3.74% | 96.26% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 211 | 28.91% | 71.09% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 98.89% | 1.11% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316789796 | G->T | INTERGENIC | None |