Detailed information of SNP:
|
SNP ID:
sf0316822657(Gbrowse)
Chromosome: chr03 Position: 16822657 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 96.26% | 3.74% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 66 | 31.82% | 68.18% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316822657 | G->A | LOC_Os03g29520(LOC_Os03g29520.1) | Synonymous |