Detailed information of SNP:
|
SNP ID:
sf0316844676(Gbrowse)
Chromosome: chr03 Position: 16844676 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 89.89% | 10.11% |
| All Indica | 787 | 82.59% | 17.41% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 206 | 45.63% | 54.37% |
| Indica Intermediate | 208 | 88.46% | 11.54% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316844676 | C->T | LOC_Os03g29560(LOC_Os03g29560.1) | Synonymous |