Detailed information of SNP:
|
SNP ID:
sf0316849040(Gbrowse)
Chromosome: chr03 Position: 16849040 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1250 | 79.76% | 20.24% |
| All Indica | 636 | 62.26% | 37.74% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 277 | 43.68% | 56.32% |
| Indica II | 193 | 88.60% | 11.40% |
| Indica Intermediate | 166 | 62.65% | 37.35% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 95.65% | 4.35% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316849040 | G->T | LOC_Os03g29560(LOC_Os03g29560.1) | INTRON |