Detailed information of SNP:
|
SNP ID:
sf0316904098(Gbrowse)
Chromosome: chr03 Position: 16904098 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 51.66% | 48.34% |
| All Indica | 799 | 27.91% | 72.09% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 4.27% | 95.73% |
| Indica II | 213 | 69.48% | 30.52% |
| Indica Intermediate | 211 | 27.96% | 72.04% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316904098 | T->C | LOC_Os03g29650(LOC_Os03g29650.1) | INTRON |