Detailed information of SNP:
|
SNP ID:
sf0316911479(Gbrowse)
Chromosome: chr03 Position: 16911479 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1363 | 90.02% | 9.98% |
| All Indica | 743 | 82.91% | 17.09% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 344 | 79.65% | 20.35% |
| Indica II | 206 | 91.26% | 8.74% |
| Indica Intermediate | 193 | 79.79% | 20.21% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316911479 | A->G | LOC_Os03g29660(LOC_Os03g29660.1) | Non-Synonymous SNP |