Detailed information of SNP:
|
SNP ID:
sf0316956159(Gbrowse)
Chromosome: chr03 Position: 16956159 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 67.37% | 32.63% |
| All Indica | 799 | 54.32% | 45.68% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 44.00% | 56.00% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 211 | 52.13% | 47.87% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316956159 | G->A | INTERGENIC | None |