Detailed information of SNP:



SNP ID: sf0316956159(Gbrowse)

Chromosome: chr03

Position: 16956159
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1419 67.37% 32.63%
All Indica799 54.32% 45.68%
All Japonica497 98.59% 1.41%
Aus67 7.46% 92.54%
Indica I375 44.00% 56.00%
Indica II213 74.65% 25.35%
Indica Intermediate211 52.13% 47.87%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 92.55% 7.45%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 14.29% 85.71%
Intermediate42 59.52% 40.48%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0316956159 G->A INTERGENIC None