Detailed information of SNP:
|
SNP ID:
sf0316973607(Gbrowse)
Chromosome: chr03 Position: 16973607 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 64.76% | 35.24% |
| All Indica | 799 | 48.19% | 51.81% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 44.53% | 55.47% |
| Indica II | 213 | 68.08% | 31.92% |
| Indica Intermediate | 211 | 34.60% | 65.40% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316973607 | G->A | INTERGENIC | None |