Detailed information of SNP:
|
SNP ID:
sf0316984541(Gbrowse)
Chromosome: chr03 Position: 16984541 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1331 | 96.47% | 3.53% |
| All Indica | 770 | 97.14% | 2.86% |
| All Japonica | 451 | 95.34% | 4.66% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 357 | 96.92% | 3.08% |
| Indica II | 207 | 99.03% | 0.97% |
| Indica Intermediate | 206 | 95.63% | 4.37% |
| Temperate Japonica | 291 | 94.50% | 5.50% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 3 | 66.67% | 33.33% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316984541 | A->G | LOC_Os03g29790(LOC_Os03g29790.1) | Non-Synonymous SNP |