Detailed information of SNP:
|
SNP ID:
sf0316989733(Gbrowse)
Chromosome: chr03 Position: 16989733 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1320 | 68.94% | 31.06% |
| All Indica | 712 | 52.25% | 47.75% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 58 | 12.07% | 87.93% |
| Indica I | 305 | 40.00% | 60.00% |
| Indica II | 209 | 71.77% | 28.23% |
| Indica Intermediate | 198 | 50.51% | 49.49% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0316989733 | G->A | INTERGENIC | None |