Detailed information of SNP:
|
SNP ID:
sf0317004465(Gbrowse)
Chromosome: chr03 Position: 17004465 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 50.42% | 49.58% |
| All Indica | 799 | 25.28% | 74.72% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 2.93% | 97.07% |
| Indica II | 213 | 61.97% | 38.03% |
| Indica Intermediate | 211 | 27.96% | 72.04% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317004465 | T->C | INTERGENIC | None |