Detailed information of SNP:
|
SNP ID:
sf0317006627(Gbrowse)
Chromosome: chr03 Position: 17006627 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1196 | 59.95% | 40.05% |
| All Indica | 588 | 35.03% | 64.97% |
| All Japonica | 493 | 98.99% | 1.01% |
| Aus | 65 | 0.00% | 100.00% |
| Indica I | 202 | 6.93% | 93.07% |
| Indica II | 196 | 67.86% | 32.14% |
| Indica Intermediate | 190 | 31.05% | 68.95% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 90 | 97.78% | 2.22% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 36 | 58.33% | 41.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317006627 | C->T | INTERGENIC | None |